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Can cognitive science methods unlock how LLMs actually work?

Does Marr's three-level framework—developed to understand biological minds—offer interpretability researchers the structured methodology they need to decode opaque language models?

Synthesis note · 2026-05-18 · sourced from Philosophy Subjectivity

David Marr's framework — the computational level (what abstract problem is the system solving), the algorithmic level (what representations and processes does it use), and the implementation level (what physical mechanisms realize the computations) — has been the backbone of cognitive science for decades. The argument in Levels of Analysis for Large Language Models is that this framework now imports usefully into LLM interpretability, because the field's problem is structurally the same problem cognitive science has had for 70 years: opaque systems whose behavior is interesting and whose internals resist direct inspection.

The historical asymmetry was that cognitive science had a methodology and few systems to study, while AI had many systems and no methodology for understanding them. The asymmetry inverts now. Cognitive science's accumulated toolkit — behavioral probes, implicit association tests, double-dissociation paradigms, representational similarity analysis, causal interventions — was developed for one kind of mind and can be redeployed for another. The methodology was always more general than its initial object.

The Marr framework does specific work in this redeployment. The computational level reframes interpretability questions around the abstract problem the LLM is solving (next-token prediction with learned objectives), independent of how. The algorithmic level surfaces the representations and processes — circuits, features, attention patterns — and the cognitive-architecture question (Newell, Anderson) of which level the algorithms run on. The implementation level connects representations to the artificial neurons that realize them.

Beyond the framework, the deeper claim is that interpretability needs layered analysis rather than monolithic explanation. A complete account of why an LLM does what it does requires all three levels, and the disciplines that have learned to do this work for biological minds are the natural source of the methods.

Inquiring lines that read this note 19

This note is a source for these research framings, grouped by the broader line of inquiry each explores. Scan the bold lines of inquiry; follow any specific question forward.

How do evaluation biases undermine LLM quality assessment systems? Can AI-generated outputs constitute genuine knowledge or valid claims? What limits mechanistic interpretability's ability to characterize models? Do language models develop causal world models or rely on statistical patterns? How do neural networks separate factual knowledge from reasoning abilities? How do language models establish social grounding in human dialogue? Is embodied interaction necessary for language meaning and genuine agency? Is model self-awareness based on genuine introspection or pattern matching? How do LLMs distinguish causal reasoning from temporal and semantic associations? How faithfully do LLMs reflect their actual reasoning in outputs and explanations? How does latent reasoning compare to verbalized chain-of-thought? Why do semantic similarity and task relevance diverge in vector embeddings?

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Original note title

Marr's three levels of analysis provide a structured toolkit for making LLMs interpretable